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miRBase entry: api-mir-210
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
api-mir-210
Accession
MI0013915
Description
Acyrthosiphon pisum
api-mir-210 precursor miRNA
Literature search
1 open access papers
mention api-mir-210
(1 sentences)
Sequence
UUGUGCGUGUGACAUCGGCUAugucgggugugcgcauaacu
((((((((...((((((((...))).)))))))))))))..
Structure
-- GUG - U UUGUGCGU ACAUC GGC |||||||| ||||| ||| A aauacgcg ugugg cug uc --- g u
Annotation confidence
Not enough data
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Genome context
GL350019.1: 289988-290028 [+]
Database links
Mature
api-miR-210
Accession
MIMAT0014716
Description
Acyrthosiphon pisum
api-miR-210 mature miRNA
Sequence
1 - UUGUGCGUGUGACAUCGGCUA - 21
Evidence
References
PubMed ID:
20444247
Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
BMC Genomics (2010) 11:281