Stem-loop api-mir-263a

Accession

MI0013918

Description

Acyrthosiphon pisum api-mir-263a precursor miRNA

Literature search

2 open access papers mention api-mir-263a
(2 sentences)

Sequence

128580 reads, 8898.0 reads per million, 6 experiments

AAUGGCACUGAAAGAAUUCACGGGguacauauuuacacaucaccCGUAGUUCUUCUGUGCCGUAUU
.(((((((.(((.(((((.(((((..................))))))))))))).)))))))...

Structure

--A       U   A     C     guacauau 
   AUGGCAC GAA GAAUU ACGGG        u
   ||||||| ||| ||||| |||||         
   UGCCGUG CUU CUUGA UGCcc        u
UUA       U   -     -     acuacaca 

Annotation confidence High

Genome context

GL349685.1: 873342-873407 [-]

Mature api-miR-263a-5p

• Accession: MIMAT0014718
• Description: Acyrthosiphon pisum api-miR-263a-5p mature miRNA
• Sequence: 1 - AAUGGCACUGAAAGAAUUCACGGG - 24
• Evidence: experimental ; Illumina [1]

Mature api-miR-263a-3p

• Accession: MIMAT0057274
• Description: Acyrthosiphon pisum api-miR-263a-3p mature miRNA
• Sequence: 45 - CGUAGUUCUUCUGUGCCGUAUU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281