Stem-loop api-mir-263b

Accession

MI0013920

Description

Acyrthosiphon pisum api-mir-263b precursor miRNA

Literature search

2 open access papers mention api-mir-263b
(2 sentences)

Sequence

23342 reads, 1500.0 reads per million, 5 experiments

CUUGGCACUGGAAGAAUUCACAGAcuaauuauugaagaucGUGAGUCUCCUGGUGUCAACua
.((((((((((.(((.(((((.((((.........)).)))))))))).))))))))))...

Structure

--C          A   A     A  -  aau 
   UUGGCACUGG AGA UUCAC GA cu   u
   |||||||||| ||| ||||| || ||   a
   AACUGUGGUC UCU GAGUG cu ga   u
auC          C   -     -  a  agu 

Annotation confidence High

Genome context

GL349685.1: 845892-845953 [-]

Mature api-miR-263b-5p

• Accession: MIMAT0014720
• Description: Acyrthosiphon pisum api-miR-263b-5p mature miRNA
• Sequence: 1 - CUUGGCACUGGAAGAAUUCACAGA - 24
• Evidence: experimental ; Illumina [1]

Mature api-miR-263b-3p

• Accession: MIMAT0057275
• Description: Acyrthosiphon pisum api-miR-263b-3p mature miRNA
• Sequence: 41 - GUGAGUCUCCUGGUGUCAAC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281