Stem-loop api-mir-275

Accession

MI0013921

Description

Acyrthosiphon pisum api-mir-275 precursor miRNA

Literature search

4 open access papers mention api-mir-275
(12 sentences)

Sequence

21022 reads, 7070.0 reads per million, 6 experiments

GGCUGCUACAGGCACUCUUAGACUcuuuaauguugacgaagUCAGGUACCUGAAGUAGCGCG
.((((((.((((.((.((..(((((.(((....))).).)))))))).)))).))))))...

Structure

--G      A    C  U  UA    - u   a 
   GCUGCU CAGG AC CU  GACU c uua u
   |||||| |||| || ||  |||| | |||  
   CGAUGA GUCC UG GA  CUga g agu g
GCG      A    A  -  --    a c   u 

Annotation confidence High

Genome context

GL350222.1: 161796-161857 [+]

Mature api-miR-275-5p

• Accession: MIMAT0057276
• Description: Acyrthosiphon pisum api-miR-275-5p mature miRNA
• Sequence: 1 - GGCUGCUACAGGCACUCUUAGACU - 24
• Evidence: experimental ; Illumina [1]

Mature api-miR-275-3p

• Accession: MIMAT0014721
• Description: Acyrthosiphon pisum api-miR-275-3p mature miRNA
• Sequence: 42 - UCAGGUACCUGAAGUAGCGCG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281