Stem-loop api-mir-277

Accession

MI0013922

Description

Acyrthosiphon pisum api-mir-277 precursor miRNA

Literature search

4 open access papers mention api-mir-277
(11 sentences)

Sequence

6401 reads, 364.0 reads per million, 6 experiments

cCGUACCAGAAGUGUUUUUGACAuggacacacgguuuucgccguucccaaaucaugUAAAUGCACUAUCUGGUACGACA
.((((((((((((((.((((.(((((....(((((....))))).......))))))))).))))).)))))))))...

Structure

--c         -     U    A     ---acac     u 
   CGUACCAGA AGUGU UUUG CAugg       acggu u
   ||||||||| ||||| |||| |||||       |||||  
   GCAUGGUCU UCACG AAAU guacu       ugccg u
ACA         A     U    -     aaacccu     c 

Annotation confidence High

Genome context

GL349754.1: 855885-855963 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from api-mir-277

Mature api-miR-277-5p

• Accession: MIMAT0057277
• Description: Acyrthosiphon pisum api-miR-277-5p mature miRNA
• Sequence: 2 - CGUACCAGAAGUGUUUUUGACA - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-277-3p

• Accession: MIMAT0014722
• Description: Acyrthosiphon pisum api-miR-277-3p mature miRNA
• Sequence: 57 - UAAAUGCACUAUCUGGUACGACA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281