Stem-loop api-mir-278

Accession

MI0013923

Description

Acyrthosiphon pisum api-mir-278 precursor miRNA

Literature search

3 open access papers mention api-mir-278
(4 sentences)

Sequence

79848 reads, 13176.0 reads per million, 6 experiments

ACGGACGAAGGUUUCAUCAAUCguguuacagauaaacgugucggUCGGUGGGACUUUCGUUCGUUU
((((((((((((((((((.((((...(((........))).)))).))))))))))))))))))..

Structure

--                  A    ugu   aga 
  ACGGACGAAGGUUUCAUC AUCg   uac   u
  |||||||||||||||||| ||||   |||    
  UGCUUGCUUUCAGGGUGG Uggc   gug   a
UU                  C    --u   caa 

Annotation confidence High

Genome context

GL349849.1: 357516-357581 [-]

Mature api-miR-278-5p

• Accession: MIMAT0057278
• Description: Acyrthosiphon pisum api-miR-278-5p mature miRNA
• Sequence: 1 - ACGGACGAAGGUUUCAUCAAUC - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-278-3p

• Accession: MIMAT0014723
• Description: Acyrthosiphon pisum api-miR-278-3p mature miRNA
• Sequence: 45 - UCGGUGGGACUUUCGUUCGUUU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281