Stem-loop api-mir-29

Accession

MI0013926

Description

Acyrthosiphon pisum api-mir-29 precursor miRNA

Literature search

1 open access papers mention api-mir-29
(1 sentences)

Sequence

13507 reads, 437.0 reads per million, 6 experiments

UGGUUUCGUAUUGGUGCAUAGAAGuauuaauuuuguaacuugucUAGCACCAUUUGAAACCAGU
((((((((...((((((.(((((((............)))..))))))))))..))))))))..

Structure

--        UAU      A    --   auuaa 
  UGGUUUCG   UGGUGC UAGA  AGu     u
  ||||||||   |||||| ||||  |||      
  ACCAAAGU   ACCACG AUcu  uca     u
UG        -UU      -    gu   auguu 

Annotation confidence High

Genome context

GL350634.1: 49544-49607 [+]

Mature api-miR-29-5p

• Accession: MIMAT0057281
• Description: Acyrthosiphon pisum api-miR-29-5p mature miRNA
• Sequence: 1 - UGGUUUCGUAUUGGUGCAUAGAAG - 24
• Evidence: experimental ; Illumina [1]

Mature api-miR-29-3p

• Accession: MIMAT0014726
• Description: Acyrthosiphon pisum api-miR-29-3p mature miRNA
• Sequence: 45 - UAGCACCAUUUGAAACCAGU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281