Stem-loop api-mir-2c

Accession

MI0013929

Description

Acyrthosiphon pisum api-mir-2c precursor miRNA

Literature search

6 open access papers mention api-mir-2c
(19 sentences)

Sequence

23384 reads, 998.0 reads per million, 6 experiments

CCGUCAAAGCGGGCUGUCGUAgaguguucauuuucuuugacuaUCACAGCCAGCUUUGAUGAGCA
.(((((((((.((((((.((((.....(((.......))))))).)))))).)))))))))....

Structure

---C         G      C    agugu   uu 
    CGUCAAAGC GGCUGU GUAg     uca  u
    ||||||||| |||||| ||||     |||  u
    GUAGUUUCG CCGACA Uauc     agu  c
ACGA         A      C    -----   uu 

Annotation confidence High

Genome context

GL349742.1: 367625-367689 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from api-mir-2c

Mature api-miR-2c-5p

• Accession: MIMAT0014728
• Description: Acyrthosiphon pisum api-miR-2c-5p mature miRNA
• Sequence: 1 - CCGUCAAAGCGGGCUGUCGUA - 21
• Evidence: experimental ; Illumina [1]

Mature api-miR-2c-3p

• Accession: MIMAT0057283
• Description: Acyrthosiphon pisum api-miR-2c-3p mature miRNA
• Sequence: 44 - UCACAGCCAGCUUUGAUGAGCA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281