miRBase entry: api-mir-2c

Stem-loop api-mir-2c


Accession
MI0013929
Description
Acyrthosiphon pisum api-mir-2c precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
3 open access papers mention api-mir-2c
(7 sentences)

Sequence

CCGUCAAAGCGGGCUGUCGUAgaguguucauuuucuuugacuaucacagccagcuuugaugagca
.(((((((((.((((((.((((.....(((.......))))))).)))))).)))))))))....

Structure
---C         G      C    agugu   uu 
    CGUCAAAGC GGCUGU GUAg     uca  u
    ||||||||| |||||| ||||     |||  u
    guaguuucg ccgaca uauc     agu  c
acga         a      c    -----   uu 


Annotation confidence Not enough data
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Genome context
GL349742.1: 367625-367689 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from api-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-2c

Accession MIMAT0014728
Description Acyrthosiphon pisum api-miR-2c mature miRNA
Sequence 1 - CCGUCAAAGCGGGCUGUCGUA - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281