Stem-loop api-mir-315

Accession

MI0013932

Description

Acyrthosiphon pisum api-mir-315 precursor miRNA

Literature search

2 open access papers mention api-mir-315
(7 sentences)

Sequence

106547 reads, 3553.0 reads per million, 4 experiments

UUUUGAUUGUUGCUCAGAAAGCCuuucauauauuguacgguggCUUUCUAGCAAUAAUCAUGACC
...(((((((((((.((((((((..................))))))))))))))))))).....

Structure

--UUU           C        uuucauau 
     UGAUUGUUGCU AGAAAGCC        a
     ||||||||||| ||||||||         
     ACUAAUAACGA UCUUUCgg        u
CCAGU           -        uggcaugu 

Annotation confidence High

Genome context

GL350261.1: 57410-57474 [-]

Mature api-miR-315-5p

• Accession: MIMAT0014730
• Description: Acyrthosiphon pisum api-miR-315-5p mature miRNA
• Sequence: 1 - UUUUGAUUGUUGCUCAGAAAGCC - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-315-3p

• Accession: MIMAT0057284
• Description: Acyrthosiphon pisum api-miR-315-3p mature miRNA
• Sequence: 44 - CUUUCUAGCAAUAAUCAUGACC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281