Stem-loop api-mir-316

Accession

MI0013933

Description

Acyrthosiphon pisum api-mir-316 precursor miRNA

Literature search

2 open access papers mention api-mir-316
(3 sentences)

Sequence

8087 reads, 491.0 reads per million, 6 experiments

UGUCUUUUUCCGCUUUGCUGCCGaaguguaaauacgauuugACAGCAAAGUGAAAGAGACUG
.(((((((((.(((((((((.((((.(((....))).)))).))))))))))))))))))..

Structure

-U         C         C    g   a 
  GUCUUUUUC GCUUUGCUG CGaa ugu a
  ||||||||| ||||||||| |||| |||  
  CAGAGAAAG UGAAACGAC guuu gca a
GU         -         A    a   u 

Annotation confidence High

Genome context

GL349950.1: 102463-102524 [+]

Mature api-miR-316-5p

• Accession: MIMAT0014731
• Description: Acyrthosiphon pisum api-miR-316-5p mature miRNA
• Sequence: 1 - UGUCUUUUUCCGCUUUGCUGCCG - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-316-3p

• Accession: MIMAT0057285
• Description: Acyrthosiphon pisum api-miR-316-3p mature miRNA
• Sequence: 42 - ACAGCAAAGUGAAAGAGACUG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281