Stem-loop api-mir-317

Accession

MI0013934

Description

Acyrthosiphon pisum api-mir-317 precursor miRNA

Literature search

3 open access papers mention api-mir-317
(4 sentences)

Sequence

aaccucgcuguguuaacuugucauguuauuucgauaauuauucgaugaaaucagagUGAACACAGCUGGUGGUAUCU
.(((..((((((((.((((......(((..((((.......))))))).....)))).)))))))).))).......

Structure

------a   uc        a    gucaug   uu    ua 
       acc  gcuguguu acuu      uua  ucga  a
       |||  |||||||| ||||      |||  ||||  u
       UGG  CGACACAA Ugag      agu  agcu  u
UCUAUGG   -U        G    -acuaa   --    ua 

Annotation confidence Not enough data

Genome context

GL349754.1: 848266-848342 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-317

Mature api-miR-317

• Accession: MIMAT0014732
• Description: Acyrthosiphon pisum api-miR-317 mature miRNA
• Sequence: 57 - UGAACACAGCUGGUGGUAUCU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281