Stem-loop api-mir-34

Accession

MI0013935

Description

Acyrthosiphon pisum api-mir-34 precursor miRNA

Literature search

4 open access papers mention api-mir-34
(11 sentences)

Sequence

5906 reads, 1571.0 reads per million, 6 experiments

UGGCAGUGUGAUUAGCUGGUUguguacauauuugauauuauacucaCGGCCACUAAGCACAUUCCACU
(((.((((((.((((.((((((((...(((........)))...)))))))))))).)))))))))..

Structure

--   C      A    C        uac   uuu 
  UGG AGUGUG UUAG UGGUUgug   aua   g
  ||| |||||| |||| ||||||||   |||    
  ACC UUACAC AAUC ACCGGCac   uau   a
UC   -      G    -        uca   uau 

Annotation confidence High

Genome context

GL349754.1: 863528-863595 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-34

Mature api-miR-34-5p

• Accession: MIMAT0014733
• Description: Acyrthosiphon pisum api-miR-34-5p mature miRNA
• Sequence: 1 - UGGCAGUGUGAUUAGCUGGUU - 21
• Evidence: experimental ; Illumina [1]

Mature api-miR-34-3p

• Accession: MIMAT0057286
• Description: Acyrthosiphon pisum api-miR-34-3p mature miRNA
• Sequence: 47 - CGGCCACUAAGCACAUUCCACU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281