Stem-loop api-mir-87b

Accession

MI0013940

Description

Acyrthosiphon pisum api-mir-87b precursor miRNA

Literature search

1 open access papers mention api-mir-87b
(1 sentences)

Sequence

128985 reads, 4704.0 reads per million, 6 experiments

uCGCCUGAAACUUGCUUUGACCUAaguacauuugcaucaagGUGAGCAAAGUUUCAGGCGUGU
.((((((((((((((((..((((..(((....)))....)))))))).))))))))))))...

Structure

--u            -    UG    --Aa   c 
   CGCCUGAAACUU GCUU  ACCU    gua a
   |||||||||||| ||||  ||||    |||  
   GCGGACUUUGAA CGAG  UGga    cgu u
UGU            A    --    acua   u 

Annotation confidence High

Genome context

GL349666.1: 1446143-1446205 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-87b

Mature api-miR-87b-5p

• Accession: MIMAT0057289
• Description: Acyrthosiphon pisum api-miR-87b-5p mature miRNA
• Sequence: 2 - CGCCUGAAACUUGCUUUGACCUA - 24
• Evidence: experimental ; Illumina [1]

Mature api-miR-87b-3p

• Accession: MIMAT0014738
• Description: Acyrthosiphon pisum api-miR-87b-3p mature miRNA
• Sequence: 42 - GUGAGCAAAGUUUCAGGCGUGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281