Stem-loop api-mir-87a

Accession

MI0013941

Description

Acyrthosiphon pisum api-mir-87a precursor miRNA

Literature search

1 open access papers mention api-mir-87a
(1 sentences)

Sequence

gggccugacucauugcucaaccuguguuauugauacguuauuagGUGAGCAAAGUUUCAGGUGUGC
(.((((((..(.(((((((.((((((((...)))))......)))))))))).)..)))))).)..

Structure

-- g      cu a       a   ------     a 
  g gccuga  c uugcuca ccu      guguu  
  | ||||||  | ||||||| |||      ||||| u
  U UGGACU  G AACGAGU Gga      cauag  
CG G      UU A       -   uuauug     u 

Annotation confidence Not enough data

Genome context

GL349666.1: 1445999-1446064 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-87a

Mature api-miR-87a

• Accession: MIMAT0014739
• Description: Acyrthosiphon pisum api-miR-87a mature miRNA
• Sequence: 45 - GUGAGCAAAGUUUCAGGUGUGC - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281