Stem-loop api-mir-92a-1

Accession

MI0013944

Description

Acyrthosiphon pisum api-mir-92a-1 precursor miRNA

Literature search

1 open access papers mention api-mir-92a-1
(1 sentences)

Sequence

4882 reads, 1074.0 reads per million, 6 experiments

UGGUCGUCGACUUGUGCAACUAUUguacaauuuuaaucagacuaaUAUUGCACAUGUCCCGGCCAAU
((((((..(((.(((((((.(((((.................)))))))))))).))).))))))..

Structure

--      UC   U       C     uacaauu 
  UGGUCG  GAC UGUGCAA UAUUg       u
  ||||||  ||| ||||||| |||||       u
  ACCGGC  CUG ACACGUU AUaau       a
UA      -C   U       -     cagacua 

Annotation confidence High

Genome context

GL350511.1: 42264-42330 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-92a-1

Mature api-miR-92a-5p

• Accession: MIMAT0057291
• Description: Acyrthosiphon pisum api-miR-92a-5p mature miRNA
• Sequence: 1 - UGGUCGUCGACUUGUGCAACUAUU - 24
• Evidence: experimental ; Illumina [1]

Mature api-miR-92a-3p

• Accession: MIMAT0014742
• Description: Acyrthosiphon pisum api-miR-92a-3p mature miRNA
• Sequence: 46 - UAUUGCACAUGUCCCGGCCAAU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281