Stem-loop api-mir-965

Accession

MI0013948

Description

Acyrthosiphon pisum api-mir-965 precursor miRNA

Literature search

3 open access papers mention api-mir-965
(3 sentences)

Sequence

1129 reads, 52.0 reads per million, 4 experiments

GAGGAAAAGUUAUAACGGUUAUGuucauaauaacagucgUAAGCGUAUAGCUUUUCCCCUU
..((((((((((((.((.(((((..............))))).))))))))))))))....

Structure

--GA            A  G     uucaua 
    GGAAAAGUUAUA CG UUAUG      a
    |||||||||||| || |||||       
    CCUUUUCGAUAU GC AAUgc      u
UUCC            -  G     ugacaa 

Annotation confidence High

Genome context

GL351142.1: 47370-47430 [-]

Mature api-miR-965-5p

• Accession: MIMAT0057292
• Description: Acyrthosiphon pisum api-miR-965-5p mature miRNA
• Sequence: 1 - GAGGAAAAGUUAUAACGGUUAUG - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-965-3p

• Accession: MIMAT0014744
• Description: Acyrthosiphon pisum api-miR-965-3p mature miRNA
• Sequence: 40 - UAAGCGUAUAGCUUUUCCCCUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281