Stem-loop api-mir-996

Accession

MI0013951

Description

Acyrthosiphon pisum api-mir-996 precursor miRNA

Literature search

2 open access papers mention api-mir-996
(4 sentences)

Sequence

5917 reads, 289.0 reads per million, 6 experiments

ACGGGUGUAGUCUUUAGUGCACGuuaauauuuauagucgUGACUAGAGUUACACUCGUCa
((((((((((.(((((((.(((((((.......))).)))))))))))))))))))))..

Structure

--          U       G    -   au 
  ACGGGUGUAG CUUUAGU CACG uua  a
  |||||||||| ||||||| |||| |||  u
  UGCUCACAUU GAGAUCA GUgc gau  u
aC          -       -    u   au 

Annotation confidence Not enough data

Genome context

GL350191.1: 494537-494596 [-]

Mature api-miR-996-5p

• Accession: MIMAT0057293
• Description: Acyrthosiphon pisum api-miR-996-5p mature miRNA
• Sequence: 1 - ACGGGUGUAGUCUUUAGUGCACG - 23

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281