Stem-loop api-mir-9b

Accession

MI0013955

Description

Acyrthosiphon pisum api-mir-9b precursor miRNA

Literature search

4 open access papers mention api-mir-9b
(6 sentences)

Sequence

38975 reads, 1161.0 reads per million, 6 experiments

UCUUUGGUACUUUAGCUGUAGguauauuuuaaagagacgcccUAAAGCUUCUGUACCAAUGUUA
...(((((((...((((.((((..................)))).))))...))))))).....

Structure

--UCU       UUU    G    uauauuuu 
     UUGGUAC   AGCU UAGg        a
     |||||||   |||| ||||         
     AACCAUG   UCGA AUcc        a
AUUGU       UCU    A    cgcagaga 

Annotation confidence High

Genome context

GL350203.1: 471721-471784 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-9b

Mature api-miR-9b-5p

• Accession: MIMAT0014749
• Description: Acyrthosiphon pisum api-miR-9b-5p mature miRNA
• Sequence: 1 - UCUUUGGUACUUUAGCUGUAG - 21
• Evidence: experimental ; Illumina [1]

Mature api-miR-9b-3p

• Accession: MIMAT0057295
• Description: Acyrthosiphon pisum api-miR-9b-3p mature miRNA
• Sequence: 43 - UAAAGCUUCUGUACCAAUGUUA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281