miRBase entry: api-mir-3016

Stem-loop api-mir-3016


Accession
MI0013958
Description
Acyrthosiphon pisum api-mir-3016 precursor miRNA


Sequence

AUUGGUAACACAUACGUCUUUAGccuuuuuguggaaaucuaaagauguuauuguuaccuacgg
...(((((((...((((((((((((.......))....))))))))))...))))))).....

Structure
--AUU       CAU          ----  uu 
     GGUAACA   ACGUCUUUAG    cc  u
     |||||||   ||||||||||    ||  u
     ccauugu   uguagaaauc    gg  u
ggcau       uau          uaaa  ug 


Annotation confidence Not enough data
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Genome context
GL350117.1: 223456-223518 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from api-mir-3016
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-3016

Accession MIMAT0014751
Description Acyrthosiphon pisum api-miR-3016 mature miRNA
Sequence 1 - AUUGGUAACACAUACGUCUUUAG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281