Stem-loop api-mir-3020

Accession

MI0013963

Description

Acyrthosiphon pisum api-mir-3020 precursor miRNA

Sequence

185 reads, 9.0 reads per million, 3 experiments

GUAAGAAUAAUGAUCCAUUAGAagguauacaaauaaaucaucUAAUAGAUCAUUUUUCCGACAG
((..(((.(((((((.((((((.(((..........))).)))))).))))))).)))..))..

Structure

--  AA   U       C      a   auac 
  GU  GAA AAUGAUC AUUAGA ggu    a
  ||  ||| ||||||| |||||| |||     
  CA  CUU UUACUAG UAAUcu cua    a
GA  GC   U       A      a   aaua 

Annotation confidence High

Genome context

GL350475.1: 216414-216477 [-]

Mature api-miR-3020-5p

• Accession: MIMAT0014756
• Description: Acyrthosiphon pisum api-miR-3020-5p mature miRNA
• Sequence: 1 - GUAAGAAUAAUGAUCCAUUAGA - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-3020-3p

• Accession: MIMAT0057296
• Description: Acyrthosiphon pisum api-miR-3020-3p mature miRNA
• Sequence: 43 - UAAUAGAUCAUUUUUCCGACAG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281