miRBase entry: api-mir-3024

Stem-loop api-mir-3024


Accession
MI0013967
Description
Acyrthosiphon pisum api-mir-3024 precursor miRNA


Sequence

UCUUUGGGAUUUAAUAGAGCCGGUugaaauuguuucguauaccagcuaucuuaaauuucaaaau
..((((((((((((...(((.((((((((...)))))...))).)))...))))))))))))..

Structure
UC            UAG   C   ---     u 
  UUUGGGAUUUAA   AGC GGU   ugaaa  
  ||||||||||||   ||| |||   ||||| u
  aaacuuuaaauu   ucg cca   gcuuu  
ua            cua   a   uau     g 


Annotation confidence Not enough data
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Genome context
GL350117.1: 223576-223639 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from api-mir-3024
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-3024

Accession MIMAT0014760
Description Acyrthosiphon pisum api-miR-3024 mature miRNA
Sequence 1 - UCUUUGGGAUUUAAUAGAGCCGGU - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281