Stem-loop api-mir-3025

Accession

MI0013968

Description

Acyrthosiphon pisum api-mir-3025 precursor miRNA

Sequence

1982 reads, 77.0 reads per million, 6 experiments

AGUAGUAAGAGAUCAGUUGGAUAuuggaagggcuauauuuugUCAAAUUGAUCUCUUAUCACGCC
.((.((((((((((((((.((((.................)))).)))))))))))))).))...

Structure

--A  A              G    uuggaag 
   GU GUAAGAGAUCAGUU GAUA       g
   || |||||||||||||| ||||       g
   CA UAUUCUCUAGUUAA CUgu       c
CCG  C              A    uuuauau 

Annotation confidence High

Genome context

GL349666.1: 411628-411692 [+]

Mature api-miR-3025-5p

• Accession: MIMAT0014761
• Description: Acyrthosiphon pisum api-miR-3025-5p mature miRNA
• Sequence: 1 - AGUAGUAAGAGAUCAGUUGGAUA - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-3025-3p

• Accession: MIMAT0057297
• Description: Acyrthosiphon pisum api-miR-3025-3p mature miRNA
• Sequence: 43 - UCAAAUUGAUCUCUUAUCACGCC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281