Stem-loop api-mir-3027

Accession

MI0013970

Description

Acyrthosiphon pisum api-mir-3027 precursor miRNA

Sequence

41038 reads, 1541.0 reads per million, 6 experiments

GGGGAUAAUUGUAGGACUUACUgugaauuuguaauacagCCAGUCUUGCAUUUAUUCCACU
.(((((((.(((((((((..(((((.........)))))..))))))))).)))))))...

Structure

--G       U         UA     aau 
   GGGAUAA UGUAGGACU  CUgug   u
   ||||||| |||||||||  |||||   u
   CCUUAUU ACGUUCUGA  gacau   g
UCA       U         CC     aau 

Annotation confidence High

Genome context

GL350604.1: 163757-163817 [-]

Mature api-miR-3027-5p

• Accession: MIMAT0057298
• Description: Acyrthosiphon pisum api-miR-3027-5p mature miRNA
• Sequence: 1 - GGGGAUAAUUGUAGGACUUACU - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-3027-3p

• Accession: MIMAT0014763
• Description: Acyrthosiphon pisum api-miR-3027-3p mature miRNA
• Sequence: 40 - CCAGUCUUGCAUUUAUUCCACU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281