Stem-loop api-mir-3031

Accession

MI0013974

Description

Acyrthosiphon pisum api-mir-3031 precursor miRNA

Sequence

61549 reads, 2377.0 reads per million, 3 experiments

GGGAAAUUUGUUAAGAAGCAAAGuguuaaauauuccUUGCUUUUUAACAAGUUUCACUA
((((((((((((((((((((((((((...)))))..))))))))))))))))))).)).

Structure

-  -                   --     u 
 GG GAAAUUUGUUAAGAAGCAA  AGugu  
 || |||||||||||||||||||  ||||| a
 UC CUUUGAACAAUUUUUCGUU  uuaua  
A  A                   cc     a 

Annotation confidence High

Genome context

GL350343.1: 72875-72933 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from api-mir-3031

Mature api-miR-3031-5p

• Accession: MIMAT0057300
• Description: Acyrthosiphon pisum api-miR-3031-5p mature miRNA
• Sequence: 1 - GGGAAAUUUGUUAAGAAGCAAAG - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-3031-3p

• Accession: MIMAT0014767
• Description: Acyrthosiphon pisum api-miR-3031-3p mature miRNA
• Sequence: 37 - UUGCUUUUUAACAAGUUUCACUA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281