Stem-loop api-mir-3032

Accession

MI0013975

Description

Acyrthosiphon pisum api-mir-3032 precursor miRNA

Sequence

8637 reads, 233.0 reads per million, 6 experiments

UGUUAGUAUAACUCUUAGUAACAgugaauuuuaaaauugUGACUAGAGUUUAUACUACCGAu
((.((((((((((((.(((.(((((..........))))).))))))).)))))))).))..

Structure

--  U        -    U   A     gaau 
  UG UAGUAUAA CUCU AGU ACAgu    u
  || |||||||| |||| ||| |||||     
  GC AUCAUAUU GAGA UCA Uguua    u
uA  C        U    -   G     aaau 

Annotation confidence High

Genome context

GL350117.1: 224322-224383 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from api-mir-3032

Mature api-miR-3032-5p

• Accession: MIMAT0014768
• Description: Acyrthosiphon pisum api-miR-3032-5p mature miRNA
• Sequence: 1 - UGUUAGUAUAACUCUUAGUAACA - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-3032-3p

• Accession: MIMAT0057301
• Description: Acyrthosiphon pisum api-miR-3032-3p mature miRNA
• Sequence: 40 - UGACUAGAGUUUAUACUACCGA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281