Stem-loop api-mir-3033

Accession

MI0013976

Description

Acyrthosiphon pisum api-mir-3033 precursor miRNA

Sequence

1959 reads, 92.0 reads per million, 5 experiments

ACAAGAAUGGUUGCCCGUGAACGugguaauuugauucgUCCACGGACAUCCAUUUUUGUGA
((((((((((.((.(((((.(((.............))).))))).)).))))))))))..

Structure

--          U  C     A   uggua 
  ACAAGAAUGG UG CCGUG ACG     a
  |||||||||| || ||||| |||     u
  UGUUUUUACC AC GGCAC Ugc     u
AG          U  A     C   uuagu 

Annotation confidence High

Genome context

GL349746.1: 734952-735012 [+]

Mature api-miR-3033-5p

• Accession: MIMAT0057302
• Description: Acyrthosiphon pisum api-miR-3033-5p mature miRNA
• Sequence: 1 - ACAAGAAUGGUUGCCCGUGAACG - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-3033-3p

• Accession: MIMAT0014769
• Description: Acyrthosiphon pisum api-miR-3033-3p mature miRNA
• Sequence: 39 - UCCACGGACAUCCAUUUUUGUGA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281