Stem-loop api-mir-252b

Accession

MI0013981

Description

Acyrthosiphon pisum api-mir-252b precursor miRNA

Literature search

2 open access papers mention api-mir-252b
(2 sentences)

Sequence

6807 reads, 1008.0 reads per million, 6 experiments

CUAAGUAGUAGCGCCAACGGUGAauugauuuuaaauaugucACCUGCGUACUACUGCUUACCA
.((((((((((.((((..(((((..((........))..))))))).)).))))))))))...

Structure

--C          C  -  AC     au  auu 
   UAAGUAGUAG GC CA  GGUGA  ug   u
   |||||||||| || ||  |||||  ||    
   AUUCGUCAUC UG GU  CCAcu  au   u
ACC          A  C  --     gu  aaa 

Annotation confidence High

Genome context

GL349872.1: 513369-513431 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-252b

Mature api-miR-252b-5p

• Accession: MIMAT0014772
• Description: Acyrthosiphon pisum api-miR-252b-5p mature miRNA
• Sequence: 1 - CUAAGUAGUAGCGCCAACGGUGA - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-252b-3p

• Accession: MIMAT0057303
• Description: Acyrthosiphon pisum api-miR-252b-3p mature miRNA
• Sequence: 42 - ACCUGCGUACUACUGCUUACCA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281