Stem-loop api-mir-3036-1

Accession

MI0013982

Description

Acyrthosiphon pisum api-mir-3036-1 precursor miRNA

Sequence

93913 reads, 2366.0 reads per million, 5 experiments

AUUGGUUUCUAGAUCUCAGCAuauaaauugauuguugCUGGGACUUAGAAAGCAAUAU
((((.(((((((.((((((((.((((.....)))))))))))).))))))).))))..

Structure

--    G       A        u    a 
  AUUG UUUCUAG UCUCAGCA auaa u
  |||| ||||||| |||||||| |||| u
  UAAC AAAGAUU AGGGUCgu uguu g
UA    G       C        -    a 

Annotation confidence High

Genome context

GL349621.1: 186094-186151 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from api-mir-3036-1

Mature api-miR-3036-5p

• Accession: MIMAT0014773
• Description: Acyrthosiphon pisum api-miR-3036-5p mature miRNA
• Sequence: 1 - AUUGGUUUCUAGAUCUCAGCA - 21
• Evidence: experimental ; Illumina [1]

Mature api-miR-3036-3p

• Accession: MIMAT0057304
• Description: Acyrthosiphon pisum api-miR-3036-3p mature miRNA
• Sequence: 38 - CUGGGACUUAGAAAGCAAUAU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281