Stem-loop api-mir-3036-5

Accession

MI0013986

Description

Acyrthosiphon pisum api-mir-3036-5 precursor miRNA

Sequence

95204 reads, 2394.0 reads per million, 5 experiments

AUUGGUUUCUAGAUCUCAGCAuuuaaauugauuguugCUGGGAUUUAGAAAGCAAUAU
((((.((((((((((((((((..............)))))))))))))))).))))..

Structure

--    G                uuuaaa 
  AUUG UUUCUAGAUCUCAGCA      u
  |||| ||||||||||||||||       
  UAAC AAAGAUUUAGGGUCgu      u
UA    G                uguuag 

Annotation confidence High

Genome context

GL349621.1: 185932-185989 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from api-mir-3036-5

Mature api-miR-3036-5p

• Accession: MIMAT0014773
• Description: Acyrthosiphon pisum api-miR-3036-5p mature miRNA
• Sequence: 1 - AUUGGUUUCUAGAUCUCAGCA - 21
• Evidence: experimental ; Illumina [1]

Mature api-miR-3036-3p

• Accession: MIMAT0057304
• Description: Acyrthosiphon pisum api-miR-3036-3p mature miRNA
• Sequence: 38 - CUGGGAUUUAGAAAGCAAUAU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281