Stem-loop api-mir-3037

Accession

MI0013987

Description

Acyrthosiphon pisum api-mir-3037 precursor miRNA

Sequence

20833 reads, 520.0 reads per million, 5 experiments

AAAUUCUGAAUGUUAUUGUAGACAuucuaugauuuuaaaugUUACAAAACAUUCAGAAUUUUG
((((((((((((((.((((.((((((.((......))))))))))))))))))))))))))..

Structure

--              A    A      c  ug 
  AAAUUCUGAAUGUU UUGU GACAuu ua  a
  |||||||||||||| |||| |||||| ||   
  UUUAAGACUUACAA AACA UUguaa au  u
GU              -    -      -  uu 

Annotation confidence High

Genome context

GL350343.1: 71782-71844 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from api-mir-3037

Mature api-miR-3037-5p

• Accession: MIMAT0057306
• Description: Acyrthosiphon pisum api-miR-3037-5p mature miRNA
• Sequence: 1 - AAAUUCUGAAUGUUAUUGUAGACA - 24
• Evidence: experimental ; Illumina [1]

Mature api-miR-3037-3p

• Accession: MIMAT0014774
• Description: Acyrthosiphon pisum api-miR-3037-3p mature miRNA
• Sequence: 42 - UUACAAAACAUUCAGAAUUUUG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281