Stem-loop api-mir-3038

Accession

MI0013988

Description

Acyrthosiphon pisum api-mir-3038 precursor miRNA

Sequence

1488 reads, 102.0 reads per million, 5 experiments

UGGGGUUUCAAUAGGCAUUUACCcgacauuuaacgagaggCAAUGCCCUUAGAAAUCCCAUG
(((((((((.(..((((((..((((........)).).)..))))))..).)))))))))..

Structure

--         A UA      UA - -  aca 
  UGGGGUUUC A  GGCAUU  C C cg   u
  ||||||||| |  ||||||  | | ||    
  ACCCUAAAG U  CCGUAA  g g gc   u
GU         A UC      Cg a a  aau 

Annotation confidence High

Genome context

GL350549.1: 145537-145598 [+]

Mature api-miR-3038-5p

• Accession: MIMAT0014775
• Description: Acyrthosiphon pisum api-miR-3038-5p mature miRNA
• Sequence: 1 - UGGGGUUUCAAUAGGCAUUUACC - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-3038-3p

• Accession: MIMAT0057307
• Description: Acyrthosiphon pisum api-miR-3038-3p mature miRNA
• Sequence: 41 - CAAUGCCCUUAGAAAUCCCAUG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281