Stem-loop api-mir-306

Accession

MI0013989

Description

Acyrthosiphon pisum api-mir-306 precursor miRNA

Literature search

2 open access papers mention api-mir-306
(4 sentences)

Sequence

11214 reads, 495.0 reads per million, 6 experiments

UCAGGUACCAAGUGAUUUCUGAguaauuaaacaaacaucAGUAAUCUCUGGGUAUCUUAAC
..(((((((.((.((((.((((((..........)).)))).)))).)).)))))))....

Structure

--UC       A  U    U    -  aauu 
    AGGUACC AG GAUU CUGA gu    a
    ||||||| || |||| |||| ||     
    UCUAUGG UC CUAA GAcu ca    a
CAAU       G  U    U    a  aaca 

Annotation confidence High

Genome context

GL350203.1: 472830-472890 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-306

Mature api-miR-306-5p

• Accession: MIMAT0014776
• Description: Acyrthosiphon pisum api-miR-306-5p mature miRNA
• Sequence: 1 - UCAGGUACCAAGUGAUUUCUGA - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-306-3p

• Accession: MIMAT0057308
• Description: Acyrthosiphon pisum api-miR-306-3p mature miRNA
• Sequence: 40 - AGUAAUCUCUGGGUAUCUUAAC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281