Stem-loop api-mir-3040

Accession

MI0013991

Description

Acyrthosiphon pisum api-mir-3040 precursor miRNA

Sequence

75436 reads, 4387.0 reads per million, 6 experiments

UGGUAACUCCACCACCGAUUGCGuuuuuaauuuuguuccgCAGCCGGUGGUGACUGUUUCCACA
(((.(((..((((((((.(((((...............))))).))))))))...))).)))..

Structure

--   U   -UC        A     uuuuua 
  UGG AAC   CACCACCG UUGCG      a
  ||| |||   |||||||| |||||      u
  ACC UUG   GUGGUGGC GACgc      u
AC   U   UCA        C     cuuguu 

Annotation confidence High

Genome context

GL349988.1: 223337-223400 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-3040

Mature api-miR-3040-5p

• Accession: MIMAT0057309
• Description: Acyrthosiphon pisum api-miR-3040-5p mature miRNA
• Sequence: 1 - UGGUAACUCCACCACCGAUUGCG - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-3040-3p

• Accession: MIMAT0014778
• Description: Acyrthosiphon pisum api-miR-3040-3p mature miRNA
• Sequence: 41 - CAGCCGGUGGUGACUGUUUCCACA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281