Stem-loop api-mir-3042

Accession

MI0013993

Description

Acyrthosiphon pisum api-mir-3042 precursor miRNA

Sequence

370 reads, 13.0 reads per million, 4 experiments

GAGGGCAGAUUAUUUCUGAUACgauuuugacuuuugacagguAACAGAGUAAUUCUGUCCUUCU
(((((((((....(((((.(((..................))).)))))....)))))))))..

Structure

--         UUAU     A   gauuuuga 
  GAGGGCAGA    UUCUG UAC        c
  |||||||||    ||||| |||         
  UUCCUGUCU    GAGAC Aug        u
UC         UAAU     A   gacaguuu 

Annotation confidence High

Genome context

GL349736.1: 585356-585419 [-]

Mature api-miR-3042-5p

• Accession: MIMAT0014780
• Description: Acyrthosiphon pisum api-miR-3042-5p mature miRNA
• Sequence: 1 - GAGGGCAGAUUAUUUCUGAUAC - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-3042-3p

• Accession: MIMAT0057310
• Description: Acyrthosiphon pisum api-miR-3042-3p mature miRNA
• Sequence: 43 - AACAGAGUAAUUCUGUCCUUCU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281