Stem-loop api-mir-3043-2

Accession

MI0013995

Description

Acyrthosiphon pisum api-mir-3043-2 precursor miRNA

Sequence

1802 reads, 74.0 reads per million, 4 experiments

UCAGUAUGUGUCCUUUUAUGUGCugugcuauauuaucaaaaCACAUUAAGGACUCAUAUUGGAG
((((((((.((((((..(((((...((.((...)).))...))))).)))))).))))))))..

Structure

--        U      UU     Cug  c  u 
  UCAGUAUG GUCCUU  AUGUG   ug ua  
  |||||||| ||||||  |||||   || || a
  GGUUAUAC CAGGAA  UACAC   ac au  
GA        U      -U     aaa  u  u 

Annotation confidence High

Genome context

GL349650.1: 611113-611176 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from api-mir-3043-2

Mature api-miR-3043-5p

• Accession: MIMAT0057311
• Description: Acyrthosiphon pisum api-miR-3043-5p mature miRNA
• Sequence: 1 - UCAGUAUGUGUCCUUUUAUGUGC - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-3043-3p

• Accession: MIMAT0014781
• Description: Acyrthosiphon pisum api-miR-3043-3p mature miRNA
• Sequence: 42 - CACAUUAAGGACUCAUAUUGGAG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281