Stem-loop api-mir-3017b-2

Accession

MI0013999

Description

Acyrthosiphon pisum api-mir-3017b-2 precursor miRNA

Sequence

47 reads, 8.0 reads per million, 4 experiments

ccgugUUCUGUGACUGACUCGGCUGGCaacggacugagcccucCGGUCUGUCACGGAACACGGGA
((((((((((((((.(((.(((..(((..........)))..)))))).))))))))))))))..

Structure

--              U   U   CU   aacg 
  ccgugUUCUGUGAC GAC CGG  GGC    g
  |||||||||||||| ||| |||  |||     
  GGCACAAGGCACUG CUG GCc  ccg    a
AG              U   -   uc   aguc 

Annotation confidence Low

Genome context

GL369328.1: 10782-10846 [-]

Mature api-miR-3017b-5p

• Accession: MIMAT0057312
• Description: Acyrthosiphon pisum api-miR-3017b-5p mature miRNA
• Sequence: 6 - UUCUGUGACUGACUCGGCUGGC - 27
• Evidence: experimental ; Illumina [1]

Mature api-miR-3017b-3p

• Accession: MIMAT0014783
• Description: Acyrthosiphon pisum api-miR-3017b-3p mature miRNA
• Sequence: 44 - CGGUCUGUCACGGAACACGGGA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281