Stem-loop api-mir-3017b-3

Accession

MI0014000

Description

Acyrthosiphon pisum api-mir-3017b-3 precursor miRNA

Sequence

47 reads, 9.0 reads per million, 4 experiments

ccgugUUCUGUGACUGACUCGGCUGGCgccggacuggcgggggccagcCGGUCUGUCACGGAACACGGGA
((((((((((((((.(((.((((((((.((.(.....).)).))))))))))).))))))))))))))..

Structure

--              U   U        g  g a 
  ccgugUUCUGUGAC GAC CGGCUGGC cc g c
  |||||||||||||| ||| |||||||| || | u
  GGCACAAGGCACUG CUG GCcgaccg gg c g
AG              U   -        g  g g 

Annotation confidence Low

Genome context

GL349840.1: 302522-302591 [+]

Mature api-miR-3017b-5p

• Accession: MIMAT0057312
• Description: Acyrthosiphon pisum api-miR-3017b-5p mature miRNA
• Sequence: 6 - UUCUGUGACUGACUCGGCUGGC - 27
• Evidence: experimental ; Illumina [1]

Mature api-miR-3017b-3p

• Accession: MIMAT0014783
• Description: Acyrthosiphon pisum api-miR-3017b-3p mature miRNA
• Sequence: 49 - CGGUCUGUCACGGAACACGGGA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281