Stem-loop api-mir-3047-1

Accession

MI0014003

Description

Acyrthosiphon pisum api-mir-3047-1 precursor miRNA

Sequence

5846 reads, 235.0 reads per million, 6 experiments

AGGGAGUUUUGAAUGUUGUUGUAaaauauuuaaacaauaCAAAACAUUCAAAACUCCCUAC
(((((((((((((((((.(((((..............))))))))))))))))))))))..

Structure

--                 G     aaauau 
  AGGGAGUUUUGAAUGUU UUGUA      u
  ||||||||||||||||| |||||       
  UCCCUCAAAACUUACAA AACau      u
CA                 -     aacaaa 

Annotation confidence High

Genome context

GL350343.1: 72020-72080 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from api-mir-3047-1

Mature api-miR-3047-1-5p

• Accession: MIMAT0057313
• Description: Acyrthosiphon pisum api-miR-3047-1-5p mature miRNA
• Sequence: 1 - AGGGAGUUUUGAAUGUUGUUGUA - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-3047-3p

• Accession: MIMAT0014786
• Description: Acyrthosiphon pisum api-miR-3047-3p mature miRNA
• Sequence: 40 - CAAAACAUUCAAAACUCCCUAC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281