Stem-loop api-mir-3049

Accession

MI0014007

Description

Acyrthosiphon pisum api-mir-3049 precursor miRNA

Literature search

3 open access papers mention api-mir-3049
(4 sentences)

Sequence

1461 reads, 469.0 reads per million, 6 experiments

UCGGGAAGGCAGCUGCGGCGGACUgugcagguucgugcccaacauuccagUCCGUCCAACUCCUUUCCGUUU
.((((((((.((.((.(((((((((((..(((....)))...))...))))))))))).))))))))))...

Structure

--U        C  C  C         ---  -ca   u 
   CGGGAAGG AG UG GGCGGACUg   ug   ggu c
   |||||||| || || |||||||||   ||   |||  
   GCCUUUCC UC AC CUGCCUgac   ac   ccg g
UUU        -  A  -         cuu  aac   u 

Annotation confidence High

Genome context

GL349641.1: 802520-802591 [+]

Mature api-miR-3049-5p

• Accession: MIMAT0014789
• Description: Acyrthosiphon pisum api-miR-3049-5p mature miRNA
• Sequence: 1 - UCGGGAAGGCAGCUGCGGCGGACU - 24
• Evidence: experimental ; Illumina [1]

Mature api-miR-3049-3p

• Accession: MIMAT0057316
• Description: Acyrthosiphon pisum api-miR-3049-3p mature miRNA
• Sequence: 51 - UCCGUCCAACUCCUUUCCGUUU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281