Stem-loop api-mir-2796

Accession

MI0014008

Description

Acyrthosiphon pisum api-mir-2796 precursor miRNA

Literature search

1 open access papers mention api-mir-2796
(1 sentences)

Sequence

3029 reads, 241.0 reads per million, 6 experiments

aguuguuucaaccggucuucagcgacuauaaaacaauguuuGUAGGCCGGCGGAAACUACUAG
(((.(((((..(((((((...((((.(((......))).)))))))))))..))))).)))..

Structure

--   u     aa       uca    c   aa 
  agu guuuc  ccggucu   gcga uau  a
  ||| |||||  |||||||   |||| |||   
  UCA CAAAG  GGCCGGA   UGuu gua  a
GA   U     GC       ---    u   ac 

Annotation confidence Not enough data

Genome context

GL350032.1: 229555-229617 [-]

Mature api-miR-2796-3p

• Accession: MIMAT0014790
• Description: Acyrthosiphon pisum api-miR-2796-3p mature miRNA
• Sequence: 42 - GUAGGCCGGCGGAAACUACUAG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281