Stem-loop api-mir-3050

Accession

MI0014009

Description

Acyrthosiphon pisum api-mir-3050 precursor miRNA

Sequence

395048 reads, 13723.0 reads per million, 6 experiments

UGAGAUCUUGAUAAACUCGCCUgugaauuuuuaaaacuagGCGAGGAUAUAAAGAUCUUAUU
(((((((((.(((..(((((((((...........)).)))))))..))).)))))))))..

Structure

--         G   AA       -  gaau 
  UGAGAUCUU AUA  CUCGCCU gu    u
  ||||||||| |||  ||||||| ||    u
  AUUCUAGAA UAU  GAGCGga ca    u
UU         A   AG       u  aaau 

Annotation confidence High

Genome context

GL349674.1: 1167920-1167981 [+]

Mature api-miR-3050-5p

• Accession: MIMAT0014791
• Description: Acyrthosiphon pisum api-miR-3050-5p mature miRNA
• Sequence: 1 - UGAGAUCUUGAUAAACUCGCCU - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-3050-3p

• Accession: MIMAT0057317
• Description: Acyrthosiphon pisum api-miR-3050-3p mature miRNA
• Sequence: 41 - GCGAGGAUAUAAAGAUCUUAUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281