Stem-loop api-mir-3051-1

Accession

MI0014010

Description

Acyrthosiphon pisum api-mir-3051-1 precursor miRNA

Sequence

11633 reads, 311.0 reads per million, 5 experiments

AAGGAACGUUAAAAACCAUUGUguauauguuuaaauccuuaaauguuaaaacaacAAUGGUGUUUUUCGUUUCUAUA
.(((((((..(((.((((((((((..((((((((....))))))))....)).)))))))).)))..)))))))...

Structure

--A       UU   A        -  --au        a 
   AGGAACG  AAA ACCAUUGU gu    auguuuaa u
   |||||||  ||| |||||||| ||    ||||||||  
   UCUUUGC  UUU UGGUAAca ca    uguaaauu c
AUA       UU   G        a  aaau        c 

Annotation confidence High

Genome context

GL349714.1: 1085537-1085613 [-]

Mature api-miR-3051-5p

• Accession: MIMAT0014792
• Description: Acyrthosiphon pisum api-miR-3051-5p mature miRNA
• Sequence: 1 - AAGGAACGUUAAAAACCAUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-3051-3p

• Accession: MIMAT0057318
• Description: Acyrthosiphon pisum api-miR-3051-3p mature miRNA
• Sequence: 56 - AAUGGUGUUUUUCGUUUCUAUA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281