Stem-loop api-mir-3053

Accession

MI0014015

Description

Acyrthosiphon pisum api-mir-3053 precursor miRNA

Sequence

710 reads, 50.0 reads per million, 4 experiments

AGGUAACUUAUUCACUGUGCGAguguuguguuugaaaaucCCACGGUUGAAUAAGGUACCAUA
.((((.(((((((((((((.((...(((....)))...)).))))).)))))))).))))...

Structure

--A    A        -     C  gug   u 
   GGUA CUUAUUCA CUGUG GA   uug g
   |||| |||||||| ||||| ||   |||  
   CCAU GAAUAAGU GGCAC cu   agu u
AUA    G        U     C  aaa   u 

Annotation confidence High

Genome context

GL350117.1: 223099-223161 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from api-mir-3053

Mature api-miR-3053-5p

• Accession: MIMAT0057319
• Description: Acyrthosiphon pisum api-miR-3053-5p mature miRNA
• Sequence: 1 - AGGUAACUUAUUCACUGUGCGA - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-3053-3p

• Accession: MIMAT0014795
• Description: Acyrthosiphon pisum api-miR-3053-3p mature miRNA
• Sequence: 41 - CCACGGUUGAAUAAGGUACCAUA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281