Stem-loop api-mir-3054

Accession

MI0014017

Description

Acyrthosiphon pisum api-mir-3054 precursor miRNA

Sequence

UUAGUGGAUUCGCCUGUUGACACCGGCacccuggucaugaccaccaucucaccaggguuagguuaggcagguccgccaggg
...(((((((.(((((.....(((...((((((((.(((.....)))...))))))))..)))))))).))))))).....

Structure

--UUA       C     UUGAC   GGC        --c   a 
     GUGGAUU GCCUG     ACC   acccuggu   aug c
     ||||||| |||||     |||   ||||||||   ||| c
     cgccugg cggau     ugg   ugggacca   uac a
gggac       a     -----   -au        cuc   c 

Annotation confidence Low

Genome context

GL349677.1: 657048-657128 [+]

Mature api-miR-3054

• Accession: MIMAT0014797
• Description: Acyrthosiphon pisum api-miR-3054 mature miRNA
• Sequence: 1 - UUAGUGGAUUCGCCUGUUGACACCGGC - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281