miRBase entry: mmu-mir-486b

Stem-loop mmu-mir-486b

Accession

MI0014103

Description

Mus musculus mmu-mir-486b precursor miRNA mir-486

Gene
family?

RF00784; mir-486

Literature search

72 open access papers mention mmu-mir-486b
(605 sentences)

Sequence

885191 reads, 1529 reads per million, 101 experiments

cccacccugacgcaUCCUGUACUGAGCUGCCCCGAGcugagcacagugaaggaccuCGGGGCAGCUCAGUACAGGAccccucagggaggg
(((.((((((.(..((((((((((((((((((((((((..((...))..))...))))))))))))))))))))))..).)))))).)))

Structure

   a      c ca                      ---  ga  a 
ccc cccuga g  UCCUGUACUGAGCUGCCCCGAG   cu  gc  
||| |||||| |  ||||||||||||||||||||||   ||  || c
ggg gggacu c  AGGACAUGACUCGACGGGGCuc   ga  ug  
   a      c cc                      cag  ag  a

Annotation confidence High

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Genome context

chr8: 23142573-23142662 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-486b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mmu-miR-486b-5p

Accession	MIMAT0014943
Description	Mus musculus mmu-miR-486b-5p mature miRNA
Sequence	15 - UCCUGUACUGAGCUGCCCCGAG - 36
Evidence	experimental Illumina [1]
Database links
Predicted targets

Mature mmu-miR-486b-3p

Accession	MIMAT0014944
Description	Mus musculus mmu-miR-486b-3p mature miRNA
Sequence	57 - CGGGGCAGCUCAGUACAGGA - 76
Evidence	experimental Illumina [1]
Database links
Predicted targets

References

PubMed ID: 20413612
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
"Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
"Genes Dev (2010) 24:992-1009