Stem-loop oar-let-7c

Accession

MI0014114

Description

Ovis aries oar-let-7c precursor miRNA

Literature search

13 open access papers mention oar-let-7c
(45 sentences)

Sequence

80643 reads, 32850 reads per million, 15 experiments

gcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaacuguacaaccuucuagcuuuccuuggagc
((.((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..))))))))

Structure

  a      uU   G   U             ua  g ua  c 
gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
|| ||||||  ||| ||| |||||||||||||  || |  || c
cg agguuc  uuc auc uccaacaugucaa  uu a  gu  
  -      cu   g   u             --  g gg  c 

Annotation confidence Medium

Genome context

chr1: 138651622-138651705 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oar-let-7c

Mature oar-let-7c

• Accession: MIMAT0014964
• Description: Ovis aries oar-let-7c mature miRNA
• Sequence: 11 - UGAGGUAGUAGGUUGUAUGGUU - 32
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 20140706
   Characterization of microRNAs from sheep (Ovis aries) using computational and experimental analyses
   "Sheng X, Song X, Yu Y, Niu L, Li S, Li H, Wei C, Liu T, Zhang L, Du L"
   "Mol Biol Rep (2011) 38:3161-3171


2. PubMed ID: 23269700
   MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200
   "Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E"
   "Physiol Genomics (2013) 45:151-161