Stem-loop hsa-mir-3180-2

Accession

MI0014215

Symbol

HGNC: MIR3180-2

Description

Homo sapiens hsa-mir-3180-2 precursor miRNA mir-3180

Gene
family

RF02010; mir-3180

Literature search

6 open access papers mention hsa-mir-3180-2
(60 sentences)

Sequence

4408 reads, 30 reads per million, 62 experiments

gcgacgggcggagCUUCCAGACGCUCCGCCCCACGUCGcaugcgccccgggaaagcgUGGGGCGGAGCUUCCGGAGGCCccgcccugc
(((..((((((.((((((.((.((((((((((((((....(.((...)).)...)))))))))))))).)).)))))).)))))))))

Structure

   ac      a      A  C              CGca g  c 
gcg  gggcgg gCUUCC GA GCUCCGCCCCACGU    u cg  
|||  |||||| |||||| || ||||||||||||||    | || c
cgu  cccgcc CGGAGG CU CGAGGCGGGGUgcg    g gc  
   --      C      C  U              -aaa g  c 

Annotation confidence High

Genome context

chr16: 16309879-16309966 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from hsa-mir-3180-2

Disease association

hsa-mir-3180-2 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-3180-5p

• Accession: MIMAT0015057
• Description: Homo sapiens hsa-miR-3180-5p mature miRNA
• Sequence: 14 - CUUCCAGACGCUCCGCCCCACGUCG - 38
• Evidence: experimental ; Illumina [1]

Mature hsa-miR-3180-3p

• Accession: MIMAT0015058
• Description: Homo sapiens hsa-miR-3180-3p mature miRNA
• Sequence: 58 - UGGGGCGGAGCUUCCGGAGGCC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20300190
   Characterization of the Melanoma miRNAome by Deep Sequencing
   "Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
   "PLoS One (2010) 5:e9685


2. PubMed ID: 21199797
   Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene
   "Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C"
   "Cancer Res (2011) 71:78-86