miRBase entry: hsa-mir-3180-3

Stem-loop hsa-mir-3180-3

Accession

MI0014217

Symbol

HGNC: MIR3180-3

Description

Homo sapiens hsa-mir-3180-3 precursor miRNA mir-3180

Gene
family?

RF02010; mir-3180

Literature search

6 open access papers mention hsa-mir-3180-3
(60 sentences)

Sequence

4408 reads, 30 reads per million, 62 experiments

cagugcgacgggcggagCUUCCAGACGCUCCGCCCCACGUCGcaugcgccccgggaaagcgUGGGGCGGAGCUUCCGGAGGCCccgcccugcug
....(((..((((((.((((((.((.((((((((((((((....(.((...)).)...)))))))))))))).)).)))))).)))))))))..

Structure

cagu   ac      a      A  C              CGca g  c 
    gcg  gggcgg gCUUCC GA GCUCCGCCCCACGU    u cg  
    |||  |||||| |||||| || ||||||||||||||    | || c
    cgu  cccgcc CGGAGG CU CGAGGCGGGGUgcg    g gc  
--gu   --      C      C  U              -aaa g  c

Annotation confidence High

Do you think this miRNA is real?

Genome context

chr16: 18402178-18402271 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from hsa-mir-3180-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Disease association

hsa-mir-3180-3 is associated with one or more human diseases in the Human microRNA Disease Database

Disease	Description	Category	PubMed ID

Database links

Mature hsa-miR-3180-5p

Accession	MIMAT0015057
Description	Homo sapiens hsa-miR-3180-5p mature miRNA
Sequence	18 - CUUCCAGACGCUCCGCCCCACGUCG - 42
Evidence	experimental Illumina [1]
Database links
Predicted targets

Mature hsa-miR-3180-3p

Accession	MIMAT0015058
Description	Homo sapiens hsa-miR-3180-3p mature miRNA
Sequence	62 - UGGGGCGGAGCUUCCGGAGGCC - 83
Evidence	experimental Illumina [1]
Database links
Predicted targets

References

PubMed ID: 20300190
Characterization of the Melanoma miRNAome by Deep Sequencing
"Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
"PLoS One (2010) 5:e9685