miRBase entry: bmo-mir-3218

Stem-loop bmo-mir-3218


Accession
MI0014271
Description
Bombyx mori bmo-mir-3218 precursor miRNA


Sequence

2 reads, 1.0 reads per million, 2 experiments
gauccauaauaauuugauaugagacaAGUCAUACACAGAGUGAGCAGCGuugagguauggucgaggcaucacuccccuccugagcaugacucugcgcuaugaacugacccuuauuauuuagguc
...........((((((.(((((...((((((((.((((((...((..(((.(((...((..(((......))).)).))).))).)))))))).).)))).)))....)))))...)))))).

Structure
gauccauaaua      --u     -aca   -    - A      GAG  GC   g   uau  uc   gc 
           auuuga   augag    AGU CAUA C CAGAGU   CA  Guu agg   gg  gag  a
           ||||||   |||||    ||| |||| | ||||||   ||  ||| |||   ||  |||   
           uggauu   uauuc    uca guau g gucuca   gu  cga ucc   cc  cuc  u
----------c      uau     ccag   a    c c      ---  -a   g   --u  -c   ac 


Annotation confidence Not enough data
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Genome context
dbj|BSVE01000015.1|: 4812226-4812349 [-]

Database links

Mature bmo-miR-3218-5p

Accession MIMAT0015398
Description Bombyx mori bmo-miR-3218-5p mature miRNA
Sequence 27 - AGUCAUACACAGAGUGAGCAGCG - 49
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415