Stem-loop bmo-mir-3219

Accession

MI0014272

Description

Bombyx mori bmo-mir-3219 precursor miRNA

Sequence

6509 reads, 113.0 reads per million, 34 experiments

cgacgauccugaucaggucaccgGUGAGACUAAUAUAUCCAUGGUGUuauuuuuuuuuaaugaucaauuauuucuuucauuggucuacACCAUGCAUUUUUAAUCUCAGgguucucugaagaauaucaucu
.((.(((..(..(((((..(((..(((((.(((......((((((((..............(((((((.(......).))))))).)))))))).....))).))))).)))..)))))..)..))).)).

Structure

c  c   cc ga     uc   gG     C   UAUAUC        uauuuuuuuuuaau       u uu 
 ga gau  u  ucagg  acc  UGAGA UAA      CAUGGUGU              gaucaau a  u
 || |||  |  |||||  |||  ||||| |||      ||||||||              ||||||| |   
 cu cua  a  agucu  ugg  ACUCU AUU      GUACCAca              cugguua u  c
u  a   ua ga     cu   -G     A   -UUUAC        -------------u       c uu 

Annotation confidence High

Genome context

dbj|BSVE01000015.1|: 4741048-4741178 [-]

Mature bmo-miR-3219-5p

• Accession: MIMAT0015399
• Description: Bombyx mori bmo-miR-3219-5p mature miRNA
• Sequence: 24 - GUGAGACUAAUAUAUCCAUGGUGU - 47
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3219-3p

• Accession: MIMAT0053224
• Description: Bombyx mori bmo-miR-3219-3p mature miRNA
• Sequence: 89 - ACCAUGCAUUUUUAAUCUCAG - 109
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415